C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170662 Sox21-001 ENSMUSG00000061517 10090 - 14:118233232-118237030 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170662
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170662 0.047±0.05 0.035±0.01 6.791±3.95 0.072±0.05 0.980±0.10 0.075±0.00 0.008±0.00 0.008±0.00 0.389±0.12 0.028±0.01 0.153±0.05 0.583±0.53 0.014±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000890 CIL_000890_0002 VISTA 14:117893836-118495430
CIL_0008KC CIL_0008KC_0002 VISTA 14:117929617-118531411
CIL_0008M7 CIL_0008M7_0002 VISTA 14:118135485-118736834
CIL_0008LV CIL_0008LV_0002 VISTA 14:118135538-118736865
CIL_0002F7 CIL_0002F7_0002 CGP 14:118137127-118237030
CIL_0007KH CIL_0007KH_0002 UCNEbase 14:118194320-118485392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001942 IMP hair follicle development
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0042633 IMP hair cycle
GO:0043588 IMP skin development
GO:0048863 IEA stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000075617 sox3-001 protein_coding Danio_rerio 0 215
ENSDART00000049339 sox21a-001 protein_coding Danio_rerio 0 207
ENSDART00000013309 sox19a-201 protein_coding Danio_rerio 0 198
ENSDART00000114113 sox19a-001 protein_coding Danio_rerio 0 198
ENST00000244745 SOX4-001 protein_coding Homo_sapiens 1e-19 104
ENST00000245479 SOX9-001 protein_coding Homo_sapiens 7e-25 121
ENST00000306087 SOX14-001 protein_coding Homo_sapiens 0 307
ENST00000325404 SOX2-001 protein_coding Homo_sapiens 0 298
ENST00000330949 SOX1-001 protein_coding Homo_sapiens 0 326
ENST00000340356 SOX18-001 protein_coding Homo_sapiens 1e-19 102
ENST00000360880 SOX10-001 protein_coding Homo_sapiens 5e-20 104
ENST00000376945 SOX21-001 protein_coding Homo_sapiens 0 1611
ENST00000396884 SOX10-002 protein_coding Homo_sapiens 5e-20 104
ENST00000427770 SOX10-003 protein_coding Homo_sapiens 2e-20 104

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