C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170953 Rps13-201 ENSMUSG00000090862 10090 - 7:116331507-116334190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170953
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170953 156.952±60.52 99.598±10.63 531.173±34.59 205.697±127.59 267.808±88.40 331.103±36.41 158.458±42.43 244.880±24.55 313.593±200.67 218.667±46.47 172.143±17.33 276.101±72.98 362.712±202.34 236.675±116.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000836 CIL_000836_0002 VISTA 7:115904293-116509702
CIL_0003ZX CIL_0003ZX_0002 CGP 7:116123493-116334190
CIL_0003ZW CIL_0003ZW_0002 CGP 7:116331507-116443458

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IEA mRNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022627 IEA cytosolic small ribosomal subunit
GO:0033119 IEA negative regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228140 RPS13-010 protein_coding Homo_sapiens 0 372
ENST00000437890 RPS13P2-001 processed_pseudogene Homo_sapiens 0 464
ENST00000448956 RP6-29D12.3-001 processed_pseudogene Homo_sapiens 6e-28 126
ENST00000458382 RP11-272G22.2-001 processed_pseudogene Homo_sapiens 2e-28 128
ENST00000525634 RPS13-001 protein_coding Homo_sapiens 0 577
ENST00000525828 RPS13-005 retained_intron Homo_sapiens 0 507
ENST00000526895 RPS13-002 processed_transcript Homo_sapiens 0 551
ENST00000528074 RPS13-004 retained_intron Homo_sapiens 1e-24 117
ENST00000531908 RPS13-008 retained_intron Homo_sapiens 0 359
ENST00000533969 RPS13-007 protein_coding Homo_sapiens 0 198
ENST00000534329 RPS13-003 retained_intron Homo_sapiens 0 228

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