C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium binding and coiled coil domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171838 Calcoco1-002 ENSMUSG00000023055 10090 - 15:102707585-102722131 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171838
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171838 6.047±0.70 4.776±1.83 3.449±0.00 2.929±0.26 2.770±0.36 0.970±0.29 6.138±0.04 5.078±0.66 6.791±2.14 2.867±2.22 1.218±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_00003I CIL_00003I_0002 CGP 15:102662864-102722178
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00033H CIL_00033H_0004 CGP 15:102706779-102928814

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003682 IDA chromatin binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262059 CALCOCO1-004 protein_coding Homo_sapiens 0 2338
ENST00000430117 CALCOCO1-006 protein_coding Homo_sapiens 0 1053
ENST00000546443 CALCOCO1-011 protein_coding Homo_sapiens 0 507
ENST00000546619 CALCOCO1-027 protein_coding Homo_sapiens 0 701
ENST00000546774 CALCOCO1-018 retained_intron Homo_sapiens 0 283
ENST00000547885 CALCOCO1-019 processed_transcript Homo_sapiens 0 409
ENST00000547949 CALCOCO1-021 processed_transcript Homo_sapiens 0 597
ENST00000547988 CALCOCO1-005 retained_intron Homo_sapiens 0 726
ENST00000548177 CALCOCO1-016 protein_coding Homo_sapiens 0 549
ENST00000548263 CALCOCO1-003 protein_coding Homo_sapiens 0 2281
ENST00000548431 CALCOCO1-020 retained_intron Homo_sapiens 0 427
ENST00000549173 CALCOCO1-030 protein_coding Homo_sapiens 0 385
ENST00000549349 CALCOCO1-015 protein_coding Homo_sapiens 0 451
ENST00000549613 CALCOCO1-013 retained_intron Homo_sapiens 0 699
ENST00000549688 CALCOCO1-024 protein_coding Homo_sapiens 0 401
ENST00000549784 CALCOCO1-017 protein_coding Homo_sapiens 0 597
ENST00000549935 CALCOCO1-007 retained_intron Homo_sapiens 0 1836
ENST00000550804 CALCOCO1-001 protein_coding Homo_sapiens 0 2294
ENST00000551900 CALCOCO1-028 protein_coding Homo_sapiens 0 708
ENST00000552282 CALCOCO1-022 retained_intron Homo_sapiens 0 457
ENST00000552623 CALCOCO1-025 protein_coding Homo_sapiens 0 475
ENST00000553154 CALCOCO1-026 retained_intron Homo_sapiens 0 667

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