C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171887 Rhbg-001 ENSMUSG00000001417 10090 - 3:88242874-88254709 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000171887
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000171887 0.770±0.26 0.525±0.25 1.919±0.66 0.289±0.00 0.973±0.43 2.901±1.01 0.121±0.00 26.373±15.59 11.044±7.56 5.510±1.18 0.815±0.16 0.173±0.08 0.700±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005887 ISS integral component of plasma membrane
GO:0008519 IEA:IDA ammonium transmembrane transporter activity
GO:0014731 ISS spectrin-associated cytoskeleton
GO:0015696 IDA ammonium transport
GO:0016020 IDA membrane
GO:0016323 IDA basolateral plasma membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0072488 IEA ammonium transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000451864 RHBG-006 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000537040 RHBG-001 protein_coding Homo_sapiens 0 1437
ENST00000612897 RHBG-003 nonsense_mediated_decay Homo_sapiens 0 1260
ENST00000613460 RHBG-002 nonsense_mediated_decay Homo_sapiens 0 1256
ENST00000618120 RHBG-004 retained_intron Homo_sapiens 0 983
ENST00000620376 RHBG-009 nonsense_mediated_decay Homo_sapiens 0 383

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