C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171937 Arhgap35-201 ENSMUSG00000058230 10090 - 7:16496252-16614937 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000171937
Transcript ID Adrenal Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171937 11.040±2.30 13.648±0.00 4.486±1.20 5.023±0.85 2.404±0.11 4.932±0.00 1.429±0.24 6.832±1.93 1.153±0.71 5.288±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0002 VISTA 7:16104746-16706411
CIL_00062F CIL_00062F_0002 CGP 7:16455721-16614993

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0003677 IEA DNA binding
GO:0005096 TAS GTPase activator activity
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007229 TAS integrin-mediated signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008360 IDA regulation of cell shape
GO:0010976 IGI positive regulation of neuron projection development
GO:0015629 IDA actin cytoskeleton
GO:0030900 IMP forebrain development
GO:0035024 IDA negative regulation of Rho protein signal transduction
GO:0043010 IMP camera-type eye development
GO:0043116 IMP negative regulation of vascular permeability
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000404338 ARHGAP35-001 protein_coding Homo_sapiens 0 5781
ENST00000595822 ARHGAP35-005 retained_intron Homo_sapiens 0 697
ENST00000599284 ARHGAP35-007 retained_intron Homo_sapiens 0 544
ENST00000614079 ARHGAP35-201 protein_coding Homo_sapiens 0 5781
ENST00000615647 ARHGAP35-202 protein_coding Homo_sapiens 0 2953

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