C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172272 Ddx46-202 ENSMUSG00000021500 10090 + 13:55635027-55681256 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172272
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172272 7.593±3.59 11.811±1.95 11.142±0.65 9.961±3.14 9.293±4.07 6.238±1.96 4.729±0.21 7.565±1.35 8.034±5.30 7.449±1.32 6.580±0.54 11.060±2.52 11.842±5.49 23.741±15.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_0005XR CIL_0005XR_0002 CGP 13:55623005-55681256
CIL_0005XQ CIL_0005XQ_0002 CGP 13:55635027-55703499

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006200 IEA ATP catabolic process
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099265 ddx46-003 protein_coding Danio_rerio 0 1026
ENSDART00000099278 sec24a-201 protein_coding Danio_rerio 0 950
ENSDART00000155343 ddx46-001 protein_coding Danio_rerio 0 950
ENSDART00000156233 ddx46-005 retained_intron Danio_rerio 4e-39 169
ENST00000354283 DDX46-002 protein_coding Homo_sapiens 0 3888
ENST00000452510 DDX46-001 protein_coding Homo_sapiens 0 3906
ENST00000503946 DDX46-003 retained_intron Homo_sapiens 0 1007
ENST00000505592 DDX46-010 retained_intron Homo_sapiens 0 464
ENST00000507392 DDX46-005 nonsense_mediated_decay Homo_sapiens 0 1962
ENST00000509178 DDX46-011 processed_transcript Homo_sapiens 0 798
ENST00000513592 DDX46-009 nonsense_mediated_decay Homo_sapiens 0 832

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