C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: orthodenticle homolog 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172395 Otx1-002 ENSMUSG00000005917 10090 - 11:21994769-22001710 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverLungPlacentaTestisENSMUST00000172395
Transcript ID Bladder Brain Colon Heart Liver Lung Placenta Testis
ENSMUST00000172395 0.005±0.00 0.450±0.25 0.018±0.00 0.024±0.00 0.005±0.00 0.029±0.00 0.022±0.01 0.020±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MW CIL_0007MW_0003 UCNEbase 11:21694041-22206768
CIL_00095K CIL_00095K_0002 VISTA 11:21702480-22303824
CIL_00090Q CIL_00090Q_0002 VISTA 11:21710037-22311279
CIL_00084N CIL_00084N_0002 VISTA 11:21768163-22368901
CIL_000976 CIL_000976_0002 VISTA 11:21778416-22379452

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282549 OTX1-001 protein_coding Homo_sapiens 0 1720
ENST00000366671 OTX1-002 protein_coding Homo_sapiens 0 1720
ENST00000405984 OTX1-005 nonsense_mediated_decay Homo_sapiens 0 1386
ENST00000476383 OTX1-006 retained_intron Homo_sapiens 2e-28 130
ENST00000477348 OTX1-004 retained_intron Homo_sapiens 0 248
ENST00000484066 OTX1-003 retained_intron Homo_sapiens 0 289

Loading