C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173011 Snx14-007 ENSMUSG00000032422 10090 - 9:88376752-88438898 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000173011
Transcript ID Breast
ENSMUST00000173011 3.487±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0002 UCNEbase 9:87376892-88455782
CIL_0008Z9 CIL_0008Z9_0002 VISTA 9:87836921-88439766
CIL_0007TL CIL_0007TL_0002 VISTA 9:87895357-88499255
CIL_0006BN CIL_0006BN_0003 CGP 9:88327197-88438958
CIL_0005XI CIL_0005XI_0002 CGP 9:88376750-88456616

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0038032 IEA termination of G-protein coupled receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314673 SNX14-002 protein_coding Homo_sapiens 0 1670
ENST00000346348 SNX14-001 protein_coding Homo_sapiens 0 974
ENST00000369627 SNX14-008 protein_coding Homo_sapiens 0 1670
ENST00000369635 SNX14-005 nonsense_mediated_decay Homo_sapiens 0 832
ENST00000418862 SNX14-004 protein_coding Homo_sapiens 0 374
ENST00000503491 SNX14-012 retained_intron Homo_sapiens 0 1136
ENST00000503608 SNX14-019 retained_intron Homo_sapiens 0 206
ENST00000503906 RP11-321N4.5-001 nonsense_mediated_decay Homo_sapiens 0 689
ENST00000504191 SNX14-016 retained_intron Homo_sapiens 0 233
ENST00000505648 SNX14-009 protein_coding Homo_sapiens 0 1519
ENST00000508658 SNX14-020 protein_coding Homo_sapiens 0 686
ENST00000508980 SNX14-006 processed_transcript Homo_sapiens 0 974
ENST00000509338 SNX14-013 protein_coding Homo_sapiens 0 390
ENST00000513865 SNX14-007 protein_coding Homo_sapiens 0 2641
ENST00000513869 SNX14-014 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000514419 SNX14-015 protein_coding Homo_sapiens 0 926
ENST00000515216 SNX14-011 protein_coding Homo_sapiens 0 1349

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