C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 5 class I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173253 Tubb5-004 ENSMUSG00000001525 10090 - 17:35835605-35837060 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000173253
Transcript ID Breast
ENSMUST00000173253 52.755±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785
CIL_0001X1 CIL_0001X1_0002 CGP 17:35823230-35838306
CIL_0005ET CIL_0005ET_0002 CGP 17:35833921-35859670

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 649
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 649
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 616
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 582
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 368
ENST00000248151 TUBBP1-001 transcribed_processed_pseudogene Homo_sapiens 0 787
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 588
ENST00000264071 TUBB4A-001 protein_coding Homo_sapiens 0 582
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 544
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 859
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 859
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 604
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 859
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 859
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 857
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 859
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 859
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 857
ENST00000404155 TUBB2BP1-001 unprocessed_pseudogene Homo_sapiens 0 577
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 857
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 859
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 857
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 859
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 857
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 859
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 859
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 859
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 859
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 857
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 859
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 857
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 857
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 859
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 859
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 859
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 859
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 859
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 859
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 859
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 859
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 859
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 859
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 859
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 586
ENST00000489942 TUBB2A-002 processed_transcript Homo_sapiens 0 339
ENST00000518096 TUBBP1-002 processed_transcript Homo_sapiens 0 787
ENST00000540257 TUBB4A-201 protein_coding Homo_sapiens 0 582
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 545
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000555810 TUBB3-004 protein_coding Homo_sapiens 0 551
ENST00000556536 TUBB3-012 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 544
ENST00000594075 TUBB4A-009 protein_coding Homo_sapiens 0 348
ENST00000594276 TUBB4A-010 protein_coding Homo_sapiens 0 285
ENST00000600216 TUBB4A-015 protein_coding Homo_sapiens 0 379

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