C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173393 Rbm38-001 ENSMUSG00000027510 10090 + 2:173020498-173034734 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000173393
Transcript ID Testis
ENSMUST00000173393 1.173±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_00030G CIL_00030G_0002 CGP 2:173020498-173119525

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003729 IMP mRNA binding
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0006397 IEA mRNA processing
GO:0006977 IEA DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0006978 IEA DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007050 IEA cell cycle arrest
GO:0008285 IEA negative regulation of cell proliferation
GO:0008380 IEA RNA splicing
GO:0010830 IDA regulation of myotube differentiation
GO:0030154 IEA cell differentiation
GO:0043484 IEA regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0070935 IEA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342690 RBM38-005 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000344785 RBM38-003 nonsense_mediated_decay Homo_sapiens 0 490
ENST00000356208 RBM38-001 protein_coding Homo_sapiens 0 881
ENST00000440234 RBM38-004 protein_coding Homo_sapiens 0 459

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