C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonuclease P 40 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174230 Rpp40-002 ENSMUSG00000021418 10090 - 13:35896715-35906344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000174230
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000174230 4.109±0.65 4.597±0.61 2.381±0.51 1.082±0.33 2.795±0.56 1.553±0.57 1.639±0.35 3.407±0.40 3.203±0.65 1.592±0.23 2.812±0.43 5.181±1.94 4.177±2.79 1.958±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000162 CIL_000162_0003 CGP 13:35659862-35906359
CIL_0003SE CIL_0003SE_0002 CGP 13:35893472-35970388

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001682 ISO tRNA 5'-leader removal
GO:0004526 ISO ribonuclease P activity
GO:0005655 ISO nucleolar ribonuclease P complex
GO:0090501 ISO RNA phosphodiester bond hydrolysis
GO:0090502 ISO RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319533 RPP40-002 protein_coding Homo_sapiens 0 1014
ENST00000380051 RPP40-001 protein_coding Homo_sapiens 0 725
ENST00000464646 RPP40-006 protein_coding Homo_sapiens 0 721
ENST00000618533 RPP40-201 protein_coding Homo_sapiens 0 490

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