C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | synaptotagmin binding, cytoplasmic RNA interacting protein | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000174361  |
Syncrip-008 |
ENSMUSG00000032423 |
10090 | - |
9:88456138-88480753  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007K0 | CIL_0007K0_0002 | UCNEbase | 9:87376892-88455782 |
| CIL_0007TL | CIL_0007TL_0002 | VISTA | 9:87895357-88499255 |
| CIL_0005XI | CIL_0005XI_0002 | CGP | 9:88376750-88456616 |
| CIL_0005XJ | CIL_0005XJ_0002 | CGP | 9:88407432-88482574 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0005737 | IDA | cytoplasm |
| GO:0008143 | IDA | poly(A) binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSDART00000129870
|
syncrip-201 | protein_coding | Danio_rerio | 0 | 339 |
|
ENSDART00000058779
|
syncrip-001 | protein_coding | Danio_rerio | 0 | 339 |
|
ENST00000355238
|
SYNCRIP-002 | protein_coding | Homo_sapiens | 0 | 1493 |
|
ENST00000369622
|
SYNCRIP-001 | protein_coding | Homo_sapiens | 0 | 1493 |
|
ENST00000434910
|
RP4-775C13.1-001 | processed_pseudogene | Homo_sapiens | 0 | 1378 |
|
ENST00000444272
|
SYNCRIP-003 | protein_coding | Homo_sapiens | 0 | 937 |
|
ENST00000503906
|
RP11-321N4.5-001 | nonsense_mediated_decay | Homo_sapiens | 0 | 455 |
|
ENST00000616122
|
SYNCRIP-201 | protein_coding | Homo_sapiens | 0 | 1229 |
