C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylserine synthase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174706 Ptdss2-002 ENSMUSG00000025495 10090 + 7:141131301-141154323 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonLiverLungMuscleOvaryENSMUST00000174706
Transcript ID Adipose Adrenal Bladder Brain Colon Liver Lung Muscle Ovary
ENSMUST00000174706 4.493±0.26 9.930±2.55 2.059±0.44 4.028±0.14 4.042±0.20 6.950±2.47 2.225±0.00 0.798±0.00 6.900±2.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UP CIL_0002UP_0002 CGP 7:141101219-141157021
CIL_0003OS CIL_0003OS_0002 CGP 7:141122382-141172851

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000092023 ptdss2-001 protein_coding Danio_rerio 0 544
ENST00000308020 PTDSS2-001 protein_coding Homo_sapiens 0 996
ENST00000525727 PTDSS2-004 retained_intron Homo_sapiens 0 420
ENST00000526878 PTDSS2-003 retained_intron Homo_sapiens 0 918
ENST00000527325 PTDSS2-007 retained_intron Homo_sapiens 0 429
ENST00000527479 PTDSS2-012 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000530087 PTDSS2-013 processed_transcript Homo_sapiens 4.2039e-45 185
ENST00000531520 PTDSS2-005 nonsense_mediated_decay Homo_sapiens 0 553

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