C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175807 Pan3-006 ENSMUSG00000029647 10090 + 5:147519687-147548496 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMusclePlacentaTestisENSMUST00000175807
Transcript ID Brain Liver Muscle Placenta Testis
ENSMUST00000175807 0.734±0.00 1.243±0.00 0.792±0.00 3.196±1.52 2.993±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0007MT CIL_0007MT_0002 UCNEbase 5:146994099-147547626
CIL_0000G0 CIL_0000G0_0003 CGP 5:147330741-147548502
CIL_0000G1 CIL_0000G1_0003 CGP 5:147430161-147726011

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000290 IMP deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0005515 IPI protein binding
GO:0006605 IDA protein targeting
GO:0010606 IDA positive regulation of cytoplasmic mRNA processing body assembly
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380958 PAN3-002 protein_coding Homo_sapiens 0 1395
ENST00000399613 PAN3-001 protein_coding Homo_sapiens 0 1395
ENST00000503791 PAN3-004 retained_intron Homo_sapiens 0 601

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