C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 536
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176114 Zfp536-004 ENSMUSG00000043456 10090 - 7:37479122-37770980 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000176114
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000176114 0.042±0.03 0.330±0.03 0.108±0.04 0.180±0.00 0.307±0.06 0.017±0.00 0.006±0.00 0.042±0.03 0.042±0.02 0.358±0.17 0.023±0.01 0.300±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OB CIL_0007OB_0005 UCNEbase 7:35865981-38051259
CIL_000832 CIL_000832_0002 VISTA 7:37214718-37816040
CIL_00088T CIL_00088T_0002 VISTA 7:37300137-37901254
CIL_000907 CIL_000907_0002 VISTA 7:37327774-37929438
CIL_000825 CIL_000825_0002 VISTA 7:37349561-37952733
CIL_000833 CIL_000833_0002 VISTA 7:37423252-38024496
CIL_0007PW CIL_0007PW_0002 VISTA 7:37443015-38044606

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0044323 IDA retinoic acid-responsive element binding
GO:0045665 IDA negative regulation of neuron differentiation
GO:0046872 IEA metal ion binding
GO:0048387 IDA negative regulation of retinoic acid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355537 ZNF536-004 protein_coding Homo_sapiens 0 4013
ENST00000585628 ZNF536-003 protein_coding Homo_sapiens 0 3205
ENST00000591488 ZNF536-002 protein_coding Homo_sapiens 0 507
ENST00000592773 ZNF536-005 protein_coding Homo_sapiens 0 211

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