C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 21988
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176116 Gm21988-001 ENSMUSG00000040904 10090 - 11:70235206-70239830 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000176116
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000176116 11.356±0.00 10.543±0.00 5.731±0.78 7.873±1.45 7.876±0.00 5.640±1.83 5.320±1.12 15.939±0.31 5.533±1.25 5.297±0.47 7.957±0.00 6.978±0.93 5.292±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0003 CGP 11:70235206-70239830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004521 IEA endoribonuclease activity
GO:0009303 IEA rRNA transcription
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000402093 RNASEK-201 protein_coding Homo_sapiens 0 459
ENST00000439424 C17orf49-001 protein_coding Homo_sapiens 0 972
ENST00000546395 RNASEK-003 nonsense_mediated_decay Homo_sapiens 0 351
ENST00000546495 C17orf49-006 protein_coding Homo_sapiens 0 981
ENST00000546760 C17orf49-003 protein_coding Homo_sapiens 0 641
ENST00000547302 RNASEK-C17orf49-004 protein_coding Homo_sapiens 0 848
ENST00000547709 C17orf49-009 processed_transcript Homo_sapiens 0 213
ENST00000547747 C17orf49-007 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000547863 RNASEK-C17orf49-002 retained_intron Homo_sapiens 0 1026
ENST00000548577 RNASEK-001 protein_coding Homo_sapiens 0 459
ENST00000549393 RNASEK-004 protein_coding Homo_sapiens 0 351
ENST00000549775 RNASEK-C17orf49-001 retained_intron Homo_sapiens 0 870
ENST00000549857 C17orf49-002 retained_intron Homo_sapiens 0 361
ENST00000550038 C17orf49-008 processed_transcript Homo_sapiens 0 315
ENST00000552039 RNASEK-007 protein_coding Homo_sapiens 0 477
ENST00000552176 RNASEK-011 retained_intron Homo_sapiens 0 351
ENST00000552321 RNASEK-005 nonsense_mediated_decay Homo_sapiens 0 351
ENST00000552402 C17orf49-004 protein_coding Homo_sapiens 0 569
ENST00000552775 C17orf49-005 protein_coding Homo_sapiens 0 896
ENST00000552842 RNASEK-006 protein_coding Homo_sapiens 0 385
ENST00000570898 RNASEK-008 protein_coding Homo_sapiens 0 342
ENST00000575822 RNASEK-009 retained_intron Homo_sapiens 2e-27 126
ENST00000593646 RNASEK-012 protein_coding Homo_sapiens 0 459
ENST00000607564 RNASEK-C17orf49-005 retained_intron Homo_sapiens 0 351

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