C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B cell factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176161 Ebf2-003 ENSMUSG00000022053 10090 + 14:67233586-67430918 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000176161
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000176161 0.207±0.07 1.405±1.35 0.047±0.01 1.031±0.00 0.229±0.02 0.017±0.00 0.088±0.00 0.111±0.00 0.118±0.14 0.077±0.02 0.125±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MZ CIL_0007MZ_0002 UCNEbase 14:67015990-67383923
CIL_0007UM CIL_0007UM_0002 VISTA 14:67061024-67662564

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001709 IDA cell fate determination
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0035563 IDA positive regulation of chromatin binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity
GO:0050873 IDA brown fat cell differentiation
GO:0060612 IMP adipose tissue development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006698 ebf1a-201 protein_coding Danio_rerio 0 531
ENSDART00000134114 ebf1a-001 protein_coding Danio_rerio 0 326
ENST00000408929 EBF2-002 protein_coding Homo_sapiens 0 1971
ENST00000517825 EBF2-003 retained_intron Homo_sapiens 0 793
ENST00000520164 EBF2-001 protein_coding Homo_sapiens 0 3134
ENST00000535548 EBF2-201 protein_coding Homo_sapiens 0 883

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