C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176596 Pan3-005 ENSMUSG00000029647 10090 + 5:147453289-147548496 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000176596
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000176596 1.728±0.00 1.554±0.63 4.296±2.05 2.450±0.00 1.501±0.61 2.210±0.20 1.775±0.87 2.687±0.00 0.380±0.01 3.925±1.00 2.136±0.53 9.330±3.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0007MT CIL_0007MT_0002 UCNEbase 5:146994099-147547626
CIL_0000G0 CIL_0000G0_0003 CGP 5:147330741-147548502
CIL_0000G1 CIL_0000G1_0003 CGP 5:147430161-147726011

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380958 PAN3-002 protein_coding Homo_sapiens 0 2366
ENST00000399613 PAN3-001 protein_coding Homo_sapiens 0 2366
ENST00000483842 PAN3-003 processed_transcript Homo_sapiens 0 213
ENST00000503791 PAN3-004 retained_intron Homo_sapiens 0 1441

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