C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Treacher Collins Franceschetti syndrome 1, homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176630 Tcof1-001 ENSMUSG00000024613 10090 - 18:60813755-60848971 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000176630
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000176630 2.592±0.71 1.882±0.22 3.868±0.07 3.078±1.00 2.086±1.24 1.947±1.03 1.594±0.65 2.002±0.46 1.985±1.66 1.792±0.17 2.823±1.08 3.169±1.14 4.177±2.40 0.554±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0002 VISTA 18:60604549-61207221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006810 IEA transport
GO:0042790 IMP transcription of nuclear large rRNA transcript from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323668 TCOF1-001 protein_coding Homo_sapiens 0 444
ENST00000377797 TCOF1-201 protein_coding Homo_sapiens 0 497
ENST00000394269 TCOF1-004 protein_coding Homo_sapiens 0 473
ENST00000427724 TCOF1-015 protein_coding Homo_sapiens 0 473
ENST00000439160 TCOF1-002 protein_coding Homo_sapiens 0 473
ENST00000445265 TCOF1-003 protein_coding Homo_sapiens 0 448
ENST00000504761 TCOF1-014 protein_coding Homo_sapiens 0 473
ENST00000513346 TCOF1-008 protein_coding Homo_sapiens 0 473
ENST00000515035 TCOF1-006 retained_intron Homo_sapiens 0.000000000000003 90
ENST00000515516 TCOF1-011 protein_coding Homo_sapiens 0 263

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