C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176753 Pan3-003 ENSMUSG00000029647 10090 + 5:147450660-147545945 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartLiverLungOvaryPlacentaTestisENSMUST00000176753
Transcript ID Adipose Breast Heart Liver Lung Ovary Placenta Testis
ENSMUST00000176753 1.992±0.00 4.989±1.78 1.336±0.12 1.495±0.55 6.531±0.00 7.684±0.62 9.571±0.00 6.512±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0007MT CIL_0007MT_0002 UCNEbase 5:146994099-147547626
CIL_0000G0 CIL_0000G0_0003 CGP 5:147330741-147548502
CIL_0000G1 CIL_0000G1_0003 CGP 5:147430161-147726011

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380958 PAN3-002 protein_coding Homo_sapiens 0 2660
ENST00000399613 PAN3-001 protein_coding Homo_sapiens 0 3038
ENST00000503791 PAN3-004 retained_intron Homo_sapiens 0 1694

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