C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5873
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177157 Gm5873-001 ENSMUSG00000093651 10090 - 6:6735427-6736492 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000177157
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000177157 0.713±0.30 0.349±0.22 0.105±0.02 0.322±0.15 0.414±0.19 0.051±0.03 0.157±0.10 0.099±0.04 0.376±0.14 1.037±0.53 0.010±0.01 0.411±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000981 CIL_000981_0002 VISTA 6:6158809-6759381
CIL_0007KR CIL_0007KR_0002 UCNEbase 6:6458887-6869817
CIL_0005E8 CIL_0005E8_0002 CGP 6:6557294-6868568
CIL_0008VC CIL_0008VC_0002 VISTA 6:6561655-7162377

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356657 FDPS-001 protein_coding Homo_sapiens 0 1014
ENST00000368356 FDPS-002 protein_coding Homo_sapiens 0 1014
ENST00000424976 FDPSP1-001 processed_pseudogene Homo_sapiens 0 713
ENST00000425091 FDPSP6-001 processed_pseudogene Homo_sapiens 0 388
ENST00000429043 FDPSP7-001 processed_pseudogene Homo_sapiens 0 832
ENST00000447866 FDPS-021 protein_coding Homo_sapiens 0 1014
ENST00000453932 FDPSP2-001 processed_pseudogene Homo_sapiens 0 719
ENST00000467076 FDPS-020 protein_coding Homo_sapiens 0 1014
ENST00000468479 FDPS-003 processed_transcript Homo_sapiens 0 782
ENST00000477057 FDPS-009 processed_transcript Homo_sapiens 0 699
ENST00000490140 FDPS-017 retained_intron Homo_sapiens 0 416
ENST00000491013 FDPS-004 protein_coding Homo_sapiens 0 675
ENST00000492244 FDPS-015 processed_transcript Homo_sapiens 0 370
ENST00000492887 FDPS-016 retained_intron Homo_sapiens 0 379
ENST00000611010 FDPS-201 protein_coding Homo_sapiens 0 869
ENST00000612683 FDPS-019 protein_coding Homo_sapiens 0 1014

Loading