C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box N3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177451 Foxn3-005 ENSMUSG00000033713 10090 - 12:99195094-99393072 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000177451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000177451 4.357±1.50 6.257±0.33 2.808±0.00 2.204±0.00 4.426±1.99 9.030±1.11 2.879±0.48 2.470±0.90 1.776±1.14 5.325±0.77 7.051±2.29 1.100±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KI CIL_0004KI_0002 CGP 12:98920574-99450111
CIL_0008PB CIL_0008PB_0002 VISTA 12:99038620-99641271
CIL_0008OO CIL_0008OO_0002 VISTA 12:99039106-99641370
CIL_0005C7 CIL_0005C7_0002 CGP 12:99194980-99883442

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0007095 IEA mitotic G2 DNA damage checkpoint
GO:0008022 IEA protein C-terminus binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261302 FOXN3-201 protein_coding Homo_sapiens 0 1122
ENST00000325117 FOXN3P1-001 processed_pseudogene Homo_sapiens 0 767
ENST00000345097 FOXN3-003 protein_coding Homo_sapiens 0 1122
ENST00000553353 FOXN3-017 protein_coding Homo_sapiens 8.40779e-45 183
ENST00000553840 FOXN3-009 protein_coding Homo_sapiens 0 327
ENST00000553904 FOXN3-006 protein_coding Homo_sapiens 0 257
ENST00000554005 FOXN3-016 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000555034 FOXN3-007 protein_coding Homo_sapiens 0 438
ENST00000555353 FOXN3-001 protein_coding Homo_sapiens 0 1890
ENST00000555658 FOXN3-010 processed_transcript Homo_sapiens 4e-35 152
ENST00000555855 FOXN3-005 protein_coding Homo_sapiens 0 977
ENST00000556916 FOXN3-012 protein_coding Homo_sapiens 0 377
ENST00000557258 FOXN3-004 protein_coding Homo_sapiens 0 2230
ENST00000557261 FOXN3-008 processed_transcript Homo_sapiens 2e-32 143
ENST00000557718 FOXN3-011 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000615335 FOXN3-202 protein_coding Homo_sapiens 0 2115

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