C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-X3-C motif) receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177637 Cx3cr1-202 ENSMUSG00000052336 10090 - 9:119901616-120068283 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000177637
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000177637 6.049±5.21 6.548±2.02 0.802±0.07 1.268±0.52 3.139±0.46 5.965±1.27 1.454±0.07 2.092±0.26 0.567±0.35 5.317±0.33 0.020±0.01 5.747±3.02 0.483±0.35 1.087±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006H1 CIL_0006H1_0002 CGP 9:119753763-119926579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002282 IMP microglial cell activation involved in immune response
GO:0004896 IMP cytokine receptor activity
GO:0007155 IEA cell adhesion
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0016021 IEA integral component of membrane
GO:0016525 IMP negative regulation of angiogenesis
GO:0019221 IMP cytokine-mediated signaling pathway
GO:0021795 IMP cerebral cortex cell migration
GO:0048246 IMP macrophage chemotaxis
GO:0070098 IEA chemokine-mediated signaling pathway
GO:2001240 IMP negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358309 CX3CR1-201 protein_coding Homo_sapiens 0 861
ENST00000399220 CX3CR1-001 protein_coding Homo_sapiens 0 861
ENST00000435290 CX3CR1-003 protein_coding Homo_sapiens 0 451
ENST00000541347 CX3CR1-202 protein_coding Homo_sapiens 0 861
ENST00000542107 CX3CR1-203 protein_coding Homo_sapiens 0 861

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