C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 44
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177950 Rnf44-201 ENSMUSG00000034928 10090 - 13:54679399-54687808 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000177950
Transcript ID Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000177950 4.457±0.27 13.701±5.21 2.589±0.81 0.927±0.05 6.732±1.84 9.158±4.89 1.363±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0000OZ CIL_0000OZ_0003 CGP 13:54621784-54693907
CIL_0000OY CIL_0000OY_0003 CGP 13:54679399-54736662

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099235 rnf44-001 protein_coding Danio_rerio 0.000000009 68
ENST00000259605 RNF38-001 protein_coding Homo_sapiens 3.9937e-43 182
ENST00000274811 RNF44-001 protein_coding Homo_sapiens 0 1600
ENST00000350199 RNF38-201 protein_coding Homo_sapiens 3.9937e-43 182
ENST00000353739 RNF38-002 protein_coding Homo_sapiens 3.9937e-43 182
ENST00000357058 RNF38-202 protein_coding Homo_sapiens 3.9937e-43 182
ENST00000377877 RNF38-003 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000377885 RNF38-203 protein_coding Homo_sapiens 3.9937e-43 182
ENST00000504160 RNF44-003 nonsense_mediated_decay Homo_sapiens 0 708
ENST00000504434 RNF44-004 retained_intron Homo_sapiens 2e-38 163
ENST00000506378 RNF44-007 protein_coding Homo_sapiens 0 638
ENST00000508478 RNF44-005 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000513029 RNF44-002 nonsense_mediated_decay Homo_sapiens 0 1598
ENST00000515051 RNF44-006 retained_intron Homo_sapiens 0 322
ENST00000611646 RNF38-204 protein_coding Homo_sapiens 3.9937e-43 182

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