C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dopa decarboxylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178704 Ddc-202 ENSMUSG00000020182 10090 - 11:11814101-11898144 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000178704
Transcript ID Adipose Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000178704 0.037±0.00 0.471±0.00 11.443±2.34 53.272±1.23 23.064±18.22 0.370±0.19 0.143±0.00 5.614±5.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XP CIL_0008XP_0002 VISTA 11:11227967-11828770
CIL_0008P3 CIL_0008P3_0002 VISTA 11:11375621-11977027
CIL_0008XT CIL_0008XT_0002 VISTA 11:11399170-12000205
CIL_0007SD CIL_0007SD_0002 VISTA 11:11453227-12053958
CIL_00089U CIL_00089U_0002 VISTA 11:11536402-12137998
CIL_0008KL CIL_0008KL_0002 VISTA 11:11661856-12262621
CIL_000641 CIL_000641_0002 CGP 11:11787431-11898144
CIL_0004WV CIL_0004WV_0003 CGP 11:11814101-12038683

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004058 IDA aromatic-L-amino-acid decarboxylase activity
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0006520 IEA cellular amino acid metabolic process
GO:0007623 IEA circadian rhythm
GO:0008021 IEA synaptic vesicle
GO:0009636 IDA response to toxic substance
GO:0010259 IEA multicellular organismal aging
GO:0015842 IEA synaptic vesicle amine transport
GO:0016597 IEA amino acid binding
GO:0019899 IEA enzyme binding
GO:0019904 IEA protein domain specific binding
GO:0030170 IEA pyridoxal phosphate binding
GO:0030424 IEA axon
GO:0033076 IEA isoquinoline alkaloid metabolic process
GO:0035690 IEA cellular response to drug
GO:0036468 IEA L-dopa decarboxylase activity
GO:0042416 IEA dopamine biosynthetic process
GO:0042427 IEA serotonin biosynthetic process
GO:0043025 IEA neuronal cell body
GO:0046684 IEA response to pyrethroid
GO:0052314 IEA phytoalexin metabolic process
GO:0070062 IEA extracellular vesicular exosome
GO:0071312 IEA cellular response to alkaloid
GO:0071363 IEA cellular response to growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357936 DDC-001 protein_coding Homo_sapiens 0 1443
ENST00000380984 DDC-014 protein_coding Homo_sapiens 0 985
ENST00000426377 DDC-013 protein_coding Homo_sapiens 0 981
ENST00000430300 DDC-006 protein_coding Homo_sapiens 0 821
ENST00000431062 DDC-009 protein_coding Homo_sapiens 0 689
ENST00000444124 DDC-002 protein_coding Homo_sapiens 0 1443
ENST00000444733 DDC-008 nonsense_mediated_decay Homo_sapiens 0 553
ENST00000489162 DDC-012 processed_transcript Homo_sapiens 0 571
ENST00000494914 DDC-010 retained_intron Homo_sapiens 0 462
ENST00000615193 DDC-201 protein_coding Homo_sapiens 0 689
ENST00000617822 DDC-202 protein_coding Homo_sapiens 0 689
ENST00000622873 DDC-203 protein_coding Homo_sapiens 0 1133

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