C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179047 Smg1-002 ENSMUSG00000030655 10090 - 7:118200696-118243627 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastOvaryENSMUST00000179047
Transcript ID Adrenal Breast Ovary
ENSMUST00000179047 11.574±2.92 8.454±0.15 10.985±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GM CIL_0007GM_0003 CGP 7:118118891-118243637

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308347 SMG1P1-006 processed_transcript Homo_sapiens 0 889
ENST00000309865 SMG1P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1384
ENST00000330588 SMG1-201 protein_coding Homo_sapiens 0 737
ENST00000337787 SMG1P1-002 processed_transcript Homo_sapiens 0 701
ENST00000381448 SMG1P4-004 processed_transcript Homo_sapiens 0 885
ENST00000411546 SMG1P5-003 processed_transcript Homo_sapiens 0 1415
ENST00000437413 SMG1P3-006 processed_transcript Homo_sapiens 0 270
ENST00000446231 SMG1-001 protein_coding Homo_sapiens 0 1476
ENST00000446662 SMG1P1-007 processed_transcript Homo_sapiens 0 678
ENST00000517529 SMG1P4-002 processed_transcript Homo_sapiens 0 701
ENST00000522480 SMG1P3-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1378
ENST00000522841 SMG1P3-002 processed_transcript Homo_sapiens 0 883
ENST00000523028 SMG1P4-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1380
ENST00000529428 SMG1P5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1415
ENST00000532700 SMG1-002 protein_coding Homo_sapiens 0 1868
ENST00000551766 RRN3P3-001 processed_transcript Homo_sapiens 0 451
ENST00000561947 SMG1-004 protein_coding Homo_sapiens 0 948
ENST00000563836 SMG1-015 protein_coding Homo_sapiens 0 351
ENST00000565224 SMG1-003 protein_coding Homo_sapiens 0 1568
ENST00000565246 SMG1P7-001 transcribed_unprocessed_pseudogene Homo_sapiens 1e-20 106
ENST00000565324 SMG1-005 protein_coding Homo_sapiens 0 948
ENST00000566127 SMG1P2-001 unprocessed_pseudogene Homo_sapiens 0 1421
ENST00000567737 SMG1-014 processed_transcript Homo_sapiens 3e-26 122
ENST00000569122 SMG1-013 protein_coding Homo_sapiens 0 789

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