C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: purine rich element binding protein B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179343 Purb-001 ENSMUSG00000094483 10090 - 11:6467599-6475917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000179343
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000179343 8.377±0.00 13.158±2.76 9.043±2.31 10.921±9.91 7.516±2.38 8.594±0.95 2.213±0.00 4.992±0.91 4.182±2.17 10.901±0.00 3.846±0.31 9.480±2.70 11.928±4.13 3.561±1.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BS CIL_0007BS_0003 CGP 11:6427229-6475917
CIL_0000SE CIL_0000SE_0002 CGP 11:6467599-6520965

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003690 IDA double-stranded DNA binding
GO:0003691 ISS double-stranded telomeric DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005662 IDA DNA replication factor A complex
GO:0006268 ISS DNA unwinding involved in DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0006915 NAS apoptotic process
GO:0008134 IPI transcription factor binding
GO:0008283 NAS cell proliferation
GO:0030154 NAS cell differentiation
GO:0044822 IEA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046332 IDA SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081308 purbb-201 protein_coding Danio_rerio 0 647
ENSDART00000099665 purba-001 protein_coding Danio_rerio 0 492
ENSDART00000074984 purg-201 protein_coding Danio_rerio 1e-34 154
ENSDART00000145900 purg-001 protein_coding Danio_rerio 9e-22 111
ENST00000331327 PURA-001 protein_coding Homo_sapiens 0 521
ENST00000395699 PURB-001 protein_coding Homo_sapiens 0 5020

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