C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4C, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180278 Atg4c-201 ENSMUSG00000028550 10090 + 4:99194147-99259783 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000180278
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000180278 0.498±0.07 0.876±0.00 2.834±0.73 1.324±0.19 3.052±0.00 0.536±0.13 0.301±0.00 0.707±0.28 1.025±0.28 0.750±0.18 0.705±0.18 3.251±1.38 2.424±0.94 1.087±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H9 CIL_0008H9_0002 VISTA 4:98994411-99595982
CIL_0002G5 CIL_0002G5_0002 CGP 4:99030954-99259787
CIL_00085L CIL_00085L_0002 VISTA 4:99053164-99654624
CIL_00089A CIL_00089A_0002 VISTA 4:99074142-99675600

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0005737 ISS cytoplasm
GO:0006508 IEA proteolysis
GO:0006914 ISS autophagy
GO:0008234 ISA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317868 ATG4C-001 protein_coding Homo_sapiens 0 1688
ENST00000371118 ATG4C-004 protein_coding Homo_sapiens 0 713
ENST00000371120 ATG4C-002 protein_coding Homo_sapiens 0 1688
ENST00000414558 ATG4C-005 protein_coding Homo_sapiens 0 398
ENST00000443289 ATG4C-003 protein_coding Homo_sapiens 0 568

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