C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181991 Rnf4-011 ENSMUSG00000029110 10090 + 5:34336418-34350033 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENSMUST00000181991
Transcript ID Ovary Testis
ENSMUST00000181991 75.131±0.00 348.153±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057G CIL_00057G_0002 CGP 5:34336289-34486456

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314289 RNF4-001 protein_coding Homo_sapiens 0 401
ENST00000413346 RP11-423F24.3-001 processed_pseudogene Homo_sapiens 0 374
ENST00000502316 RNF4-008 protein_coding Homo_sapiens 0 401
ENST00000506706 RNF4-003 protein_coding Homo_sapiens 0 401
ENST00000507247 RNF4-020 protein_coding Homo_sapiens 0 261
ENST00000508235 RNF4-022 nonsense_mediated_decay Homo_sapiens 6e-23 111
ENST00000509258 RNF4-002 protein_coding Homo_sapiens 0 261
ENST00000509388 RNF4-007 processed_transcript Homo_sapiens 0 399
ENST00000511600 RNF4-005 protein_coding Homo_sapiens 0 401
ENST00000511843 RNF4-011 processed_transcript Homo_sapiens 0 399
ENST00000511859 RNF4-004 protein_coding Homo_sapiens 0 261
ENST00000513284 RNF4-019 nonsense_mediated_decay Homo_sapiens 7e-22 108
ENST00000513643 RNF4-018 processed_transcript Homo_sapiens 0 274
ENST00000541204 RNF4-201 protein_coding Homo_sapiens 0 261

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