C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182371 Rbm5-002 ENSMUSG00000032580 10090 - 9:107740500-107770980 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182371
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182371 5.969±0.00 14.552±0.91 21.268±2.57 15.568±1.37 4.059±0.36 6.499±0.78 6.466±2.19 5.086±2.39 7.495±0.15 4.381±1.48 14.288±9.21 12.003±6.79 8.346±1.90

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347869 RBM5-001 protein_coding Homo_sapiens 0 3003
ENST00000395174 RBM5-014 nonsense_mediated_decay Homo_sapiens 0 1345
ENST00000404526 RBM5-012 protein_coding Homo_sapiens 0 473
ENST00000417905 RBM5-009 protein_coding Homo_sapiens 0 566
ENST00000433556 RBM5-013 retained_intron Homo_sapiens 0 457
ENST00000434592 RBM6-008 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000437500 RBM5-008 protein_coding Homo_sapiens 0 490
ENST00000438369 RBM5-011 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000441305 RBM5-007 protein_coding Homo_sapiens 0 641
ENST00000441812 RBM5-029 processed_transcript Homo_sapiens 0 377
ENST00000461242 RBM5-027 retained_intron Homo_sapiens 3e-33 145
ENST00000462025 RBM5-015 retained_intron Homo_sapiens 0 198
ENST00000464087 RBM5-004 retained_intron Homo_sapiens 0 2272
ENST00000464988 RBM5-025 retained_intron Homo_sapiens 0 505
ENST00000469838 RBM5-003 protein_coding Homo_sapiens 0 706
ENST00000471995 RBM5-016 retained_intron Homo_sapiens 0 375
ENST00000474818 RBM5-018 retained_intron Homo_sapiens 0 848
ENST00000475128 RBM5-021 retained_intron Homo_sapiens 0 795
ENST00000475590 RBM5-026 retained_intron Homo_sapiens 0 697
ENST00000479275 RBM5-024 retained_intron Homo_sapiens 0 370
ENST00000489437 RBM5-019 retained_intron Homo_sapiens 0 632
ENST00000492430 RBM5-023 retained_intron Homo_sapiens 0 540
ENST00000492472 RBM5-010 retained_intron Homo_sapiens 0 544
ENST00000493993 RBM5-022 retained_intron Homo_sapiens 0 399
ENST00000494360 RBM5-017 retained_intron Homo_sapiens 0 534
ENST00000496179 RBM5-005 retained_intron Homo_sapiens 0 966

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