C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 7909
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182688 Gm7909-001 ENSMUSG00000098068 10090 - 10:31574400-31575013 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverOvaryPlacentaTestisENSMUST00000182688
Transcript ID Adipose Bladder Brain Liver Ovary Placenta Testis
ENSMUST00000182688 0.067±0.00 0.125±0.10 0.328±0.24 0.042±0.01 0.812±0.62 0.160±0.02 0.273±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QP CIL_0002QP_0002 CGP 10:31332380-31609184
CIL_00068V CIL_00068V_0002 CGP 10:31493193-32890462

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 444
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 573
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 573
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 444
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 573
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 455
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 573
ENST00000435986 HMGB1P45-001 processed_pseudogene Homo_sapiens 0 348
ENST00000450921 HMGB1P7-001 processed_pseudogene Homo_sapiens 0 206
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 438
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 219
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 525
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0.00000000000005 82
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 553

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