C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: msh homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183013 Msx1-003 ENSMUSG00000048450 10090 - 5:37822703-37824582 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLiverMusclePlacentaTestisENSMUST00000183013
Transcript ID Adipose Breast Colon Liver Muscle Placenta Testis
ENSMUST00000183013 9.033±0.17 0.402±0.00 0.107±0.00 0.008±0.00 0.107±0.00 0.146±0.01 0.022±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000967 CIL_000967_0002 VISTA 5:37518652-38119645
CIL_0008Y0 CIL_0008Y0_0002 VISTA 5:37525669-38129220
CIL_0008DJ CIL_0008DJ_0002 VISTA 5:37551391-38152218
CIL_000969 CIL_000969_0002 VISTA 5:37601106-38202493
CIL_00096C CIL_00096C_0002 VISTA 5:37617742-38218594
CIL_00096B CIL_00096B_0002 VISTA 5:37667623-38269196
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382723 MSX1-001 protein_coding Homo_sapiens 0 627

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