C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183359 Pkp4-003 ENSMUSG00000026991 10090 + 2:59160881-59354824 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000183359
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000183359 3.330±0.24 2.077±0.70 8.810±6.82 1.774±0.00 2.590±0.00 4.241±0.20 14.758±2.11 2.960±1.02 3.679±0.20 0.671±0.07 4.527±0.36 4.578±1.77 0.906±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0002 CGP 2:59160850-59505020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0014069 IDA postsynaptic density
GO:0016337 IEA single organismal cell-cell adhesion
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032467 IEA positive regulation of cytokinesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389757 PKP4-001 protein_coding Homo_sapiens 0 3205
ENST00000389759 PKP4-002 protein_coding Homo_sapiens 0 4161
ENST00000411900 PKP4-009 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000421462 PKP4-005 nonsense_mediated_decay Homo_sapiens 0 3057
ENST00000426248 PKP4-003 nonsense_mediated_decay Homo_sapiens 0 5286
ENST00000426801 PKP4P1-001 unprocessed_pseudogene Homo_sapiens 0 1899
ENST00000452162 PKP4-004 nonsense_mediated_decay Homo_sapiens 0 2265
ENST00000457109 PKP4-010 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000462335 PKP4-011 processed_transcript Homo_sapiens 0 645
ENST00000480171 PKP4-006 retained_intron Homo_sapiens 0 2113
ENST00000481115 PKP4-012 nonsense_mediated_decay Homo_sapiens 0 662
ENST00000483881 PKP4-014 retained_intron Homo_sapiens 0 414
ENST00000486254 PKP4-007 retained_intron Homo_sapiens 0 771
ENST00000492496 PKP4-016 retained_intron Homo_sapiens 0 647
ENST00000494945 PKP4-013 processed_transcript Homo_sapiens 0 479
ENST00000495123 PKP4-015 processed_transcript Homo_sapiens 0 512

Loading