C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183625 Pkp4-006 ENSMUSG00000026991 10090 + 2:59161020-59305134 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryTestisENSMUST00000183625
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000183625 15.304±4.03 30.772±4.58 44.102±7.71 222.114±46.80 29.155±3.13 62.675±10.48 50.452±6.06 8.921±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0002 CGP 2:59160850-59505020

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389757 PKP4-001 protein_coding Homo_sapiens 0 508
ENST00000389759 PKP4-002 protein_coding Homo_sapiens 0 508
ENST00000411900 PKP4-009 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000421462 PKP4-005 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000426248 PKP4-003 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000452162 PKP4-004 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000457109 PKP4-010 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000462335 PKP4-011 processed_transcript Homo_sapiens 0 206

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