C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 27254
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183926 Gm27254-001 ENSMUSG00000099019 10090 - 9:72431127-72431643 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverOvaryPlacentaTestisENSMUST00000183926
Transcript ID Bladder Brain Heart Liver Ovary Placenta Testis
ENSMUST00000183926 0.031±0.01 0.042±0.02 0.090±0.00 0.027±0.01 0.158±0.09 0.050±0.02 0.144±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111964 hmgb1a-201 protein_coding Danio_rerio 0 230
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 592
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 466
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 586
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 586
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 564
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 466
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 586
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 392
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 586
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 368
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 473
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 390
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 486
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 381
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 569
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 455
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 475
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0.00000000009 71
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 302
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 285
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 542
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 6e-30 135
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 575
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0.000000003 66
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 521

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