C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear RNA export factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183939 Nxf1-003 ENSMUSG00000010097 10090 + 19:8757150-8765291 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000183939
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000183939 27.906±0.00 53.098±0.00 60.868±4.68 28.629±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005487 IDA nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005643 IDA nuclear pore
GO:0005737 IEA cytoplasm
GO:0006405 IDA RNA export from nucleus
GO:0016973 IPI poly(A)+ mRNA export from nucleus
GO:0042405 IDA nuclear inclusion body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294172 NXF1-201 protein_coding Homo_sapiens 0 747
ENST00000530875 NXF1-003 protein_coding Homo_sapiens 0 747
ENST00000531131 NXF1-004 protein_coding Homo_sapiens 0 1022
ENST00000531709 NXF1-006 protein_coding Homo_sapiens 0 959
ENST00000532297 NXF1-001 protein_coding Homo_sapiens 0 747

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