C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 27219
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184633 Gm27219-001 ENSMUSG00000098985 10090 - 9:36813133-36813874 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000184633
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000184633 0.113±0.02 0.024±0.00 0.088±0.06 0.151±0.07 0.175±0.02 0.100±0.03 0.127±0.05 0.115±0.06 0.100±0.02 0.051±0.02 0.494±0.22 0.032±0.02 0.073±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080D CIL_00080D_0002 VISTA 9:36753339-37355278

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329276 NOP56-009 protein_coding Homo_sapiens 0 601
ENST00000415272 NOP56-010 protein_coding Homo_sapiens 0 523
ENST00000447491 NOP56P2-001 processed_pseudogene Homo_sapiens 0 337
ENST00000462630 NOP56-005 processed_transcript Homo_sapiens 0 377
ENST00000466447 NOP56-006 processed_transcript Homo_sapiens 0 532
ENST00000467196 NOP56-007 nonsense_mediated_decay Homo_sapiens 0 523
ENST00000480447 NOP56-004 processed_transcript Homo_sapiens 0 520
ENST00000480992 NOP56-003 processed_transcript Homo_sapiens 0 235
ENST00000484998 NOP56-017 processed_transcript Homo_sapiens 0 235
ENST00000490753 NOP56-001 processed_transcript Homo_sapiens 0 516
ENST00000492135 NOP56-011 processed_transcript Homo_sapiens 0 610
ENST00000616692 NOP56-020 retained_intron Homo_sapiens 0 298

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