C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ral GEF with PH domain and SH3 binding motif 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185198 Ralgps2-005 ENSMUSG00000026594 10090 - 1:156813081-156939626 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverLungOvaryTestisENSMUST00000185198
Transcript ID Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000185198 3.119±1.26 4.179±0.00 1.098±0.00 0.842±0.00 1.533±0.19 2.717±0.61 38.032±3.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000656 CIL_000656_0002 CGP 1:156678532-156939626
CIL_0001WH CIL_0001WH_0003 CGP 1:156804166-156939626

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008150 ND biological_process
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324778 RALGPS2-003 protein_coding Homo_sapiens 0 1020
ENST00000326071 NOL4L-003 protein_coding Homo_sapiens 0.00004 55
ENST00000367634 RALGPS2-201 protein_coding Homo_sapiens 0 1600
ENST00000367635 RALGPS2-002 protein_coding Homo_sapiens 0 2071
ENST00000475781 NOL4L-006 processed_transcript Homo_sapiens 0.00004 55
ENST00000477383 RALGPS2-007 processed_transcript Homo_sapiens 0 569
ENST00000480743 RALGPS2-006 retained_intron Homo_sapiens 0 442
ENST00000495034 RALGPS2-001 retained_intron Homo_sapiens 0 1306

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