C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | calcium response factor | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000186107  |
Carf-008 |
ENSMUSG00000026017 |
10090 | + |
1:60108102-60150800  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00020R | CIL_00020R_0002 | CGP | 1:59982490-60098645 |
| CIL_00020W | CIL_00020W_0002 | CGP | 1:60069785-60153953 |
| CIL_00020V | CIL_00020V_0002 | CGP | 1:60098247-60338328 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003700 | IDA | sequence-specific DNA binding transcription factor activity |
| GO:0005654 | IDA | nucleoplasm |
| GO:0005730 | IDA | nucleolus |
| GO:0006355 | IDA | regulation of transcription, DNA-templated |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000320443
|
CARF-201 | protein_coding | Homo_sapiens | 0 | 915 |
|
ENST00000402905
|
CARF-001 | protein_coding | Homo_sapiens | 0 | 915 |
|
ENST00000414439
|
CARF-004 | protein_coding | Homo_sapiens | 0 | 881 |
|
ENST00000422368
|
CARF-003 | nonsense_mediated_decay | Homo_sapiens | 0 | 364 |
|
ENST00000428585
|
CARF-005 | protein_coding | Homo_sapiens | 0 | 915 |
|
ENST00000434998
|
CARF-007 | protein_coding | Homo_sapiens | 0 | 364 |
|
ENST00000438828
|
CARF-002 | protein_coding | Homo_sapiens | 0 | 915 |
|
ENST00000444724
|
CARF-008 | protein_coding | Homo_sapiens | 0 | 364 |
|
ENST00000457031
|
CARF-006 | nonsense_mediated_decay | Homo_sapiens | 2e-26 | 124 |
