C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, BED domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186476 Zbed6-001 ENSMUSG00000094410 10090 - 1:133619940-133661318 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000186476
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000186476 4.973±1.90 3.575±0.32 3.820±0.18 0.815±0.00 4.748±1.03 3.402±1.03 3.273±0.54 2.571±0.45 1.975±0.71 4.838±0.78 2.387±0.00 4.295±0.97 1.273±0.00 1.036±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0002 VISTA 1:133249313-133850886
CIL_00096T CIL_00096T_0002 VISTA 1:133444227-134045719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332127 ZC3H11A-004 protein_coding Homo_sapiens 0 2170
ENST00000367210 ZC3H11A-001 protein_coding Homo_sapiens 0 2170
ENST00000367211 ZC3H11B-001 processed_pseudogene Homo_sapiens 0 1068
ENST00000367212 ZC3H11A-005 protein_coding Homo_sapiens 0 1417
ENST00000367214 ZC3H11A-003 protein_coding Homo_sapiens 0 1315
ENST00000398578 RP11-74E24.2-001 processed_pseudogene Homo_sapiens 0 1079
ENST00000432282 ZC3H11A-007 protein_coding Homo_sapiens 0 497
ENST00000453771 ZC3H11A-006 protein_coding Homo_sapiens 0 1315
ENST00000461980 ZC3H11A-008 processed_transcript Homo_sapiens 1e-20 104
ENST00000466470 ZC3H11A-009 processed_transcript Homo_sapiens 2e-20 104
ENST00000492823 ZC3H11A-011 processed_transcript Homo_sapiens 8e-21 104
ENST00000495527 ZC3H11A-002 nonsense_mediated_decay Homo_sapiens 0 2106
ENST00000545588 ZC3H11A-201 protein_coding Homo_sapiens 0 2170
ENST00000550078 ZBED6-001 protein_coding Homo_sapiens 0 4228

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