C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: TAR DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000187937 Tardbp-028 ENSMUSG00000041459 10090 - 4:148615610-148616980 processed_transcript

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JY CIL_0008JY_0002 VISTA 4:148408124-149009196
CIL_0008JG CIL_0008JG_0002 VISTA 4:148444314-149044861
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659
CIL_00085P CIL_00085P_0002 VISTA 4:148597228-149198219

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240185 TARDBP-001 protein_coding Homo_sapiens 0 660
ENST00000315091 TARDBP-003 protein_coding Homo_sapiens 0 449
ENST00000473869 TARDBP-002 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000477447 TARDBP-007 nonsense_mediated_decay Homo_sapiens 5e-32 141
ENST00000480464 TARDBP-009 processed_transcript Homo_sapiens 0 806
ENST00000496840 TARDBP-008 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000610369 TARDBP-022 protein_coding Homo_sapiens 0 196
ENST00000611008 TARDBP-026 processed_transcript Homo_sapiens 0 196
ENST00000611963 TARDBP-020 nonsense_mediated_decay Homo_sapiens 0 235
ENST00000614494 TARDBP-023 nonsense_mediated_decay Homo_sapiens 0 217
ENST00000614757 TARDBP-001 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000617757 TARDBP-028 processed_transcript Homo_sapiens 6e-37 158
ENST00000619555 TARDBP-018 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000620632 TARDBP-021 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000621573 TARDBP-025 nonsense_mediated_decay Homo_sapiens 0 372

Loading