C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 9A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188347 Atg9a-001 ENSMUSG00000033124 10090 - 1:75180865-75192196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000188347
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000188347 9.465±0.00 11.941±0.37 5.473±0.00 8.927±1.59 15.026±1.24 6.094±0.32 15.622±2.36 9.448±0.88 9.956±0.34 17.189±2.16 10.213±0.90 11.354±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006EA CIL_0006EA_0002 CGP 1:75171717-75192196
CIL_0006EI CIL_0006EI_0002 CGP 1:75180860-75199387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IBA autophagic vacuole assembly
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0005768 ISO endosome
GO:0005776 IDA autophagic vacuole
GO:0005802 ISO trans-Golgi network
GO:0006914 IMP autophagy
GO:0016021 IBA integral component of membrane
GO:0034067 IMP protein localization to Golgi apparatus
GO:0034497 IBA protein localization to pre-autophagosomal structure
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0044805 IBA late nucleophagy
GO:0045087 IMP innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000065411 atg9a-001 protein_coding Danio_rerio 0 802
ENSDART00000125002 atg9a-201 protein_coding Danio_rerio 0 800
ENSDART00000137122 atg9a-003 protein_coding Danio_rerio 0 191
ENSDART00000132677 atg9a-002 protein_coding Danio_rerio 0 191
ENST00000361242 ATG9A-003 protein_coding Homo_sapiens 0 3849
ENST00000396761 ATG9A-001 protein_coding Homo_sapiens 0 3952
ENST00000409033 ATG9A-002 nonsense_mediated_decay Homo_sapiens 0 2041
ENST00000409422 ATG9A-021 protein_coding Homo_sapiens 0 3312
ENST00000409618 ATG9A-004 protein_coding Homo_sapiens 0 3976
ENST00000412355 ATG9A-011 nonsense_mediated_decay Homo_sapiens 0 706
ENST00000428226 ATG9A-012 protein_coding Homo_sapiens 0 808
ENST00000429920 ATG9A-023 protein_coding Homo_sapiens 0 913
ENST00000431715 ATG9A-010 protein_coding Homo_sapiens 0 697
ENST00000432520 ATG9A-016 protein_coding Homo_sapiens 0 702
ENST00000434939 ATG9A-019 protein_coding Homo_sapiens 0 479
ENST00000436856 ATG9A-013 protein_coding Homo_sapiens 0 893
ENST00000439812 ATG9A-009 protein_coding Homo_sapiens 0 630
ENST00000443140 ATG9A-018 protein_coding Homo_sapiens 0 501
ENST00000446716 ATG9A-006 nonsense_mediated_decay Homo_sapiens 0 1389
ENST00000455079 ATG9A-020 nonsense_mediated_decay Homo_sapiens 0 604
ENST00000456708 ATG9A-007 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000457841 ATG9A-008 protein_coding Homo_sapiens 0 839
ENST00000466217 ATG9A-015 retained_intron Homo_sapiens 0 623
ENST00000475339 ATG9A-022 retained_intron Homo_sapiens 0 776
ENST00000486766 ATG9A-014 retained_intron Homo_sapiens 0 405
ENST00000488833 ATG9A-017 processed_transcript Homo_sapiens 1e-38 163

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