C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium large conductance calcium-activated channel, subfamily M, alpha member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190044 Kcnma1-005 ENSMUSG00000063142 10090 - 14:23299891-24004205 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLungMuscleOvaryTestisENSMUST00000190044
Transcript ID Adipose Bladder Brain Colon Heart Kidney Lung Muscle Ovary Testis
ENSMUST00000190044 0.512±0.00 6.810±0.77 4.456±0.00 3.107±1.29 0.096±0.00 0.224±0.00 0.228±0.00 1.565±0.33 4.337±1.70 0.188±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0002 UCNEbase 14:21252402-23394598
CIL_0005E6 CIL_0005E6_0002 CGP 14:22019712-24004859
CIL_000928 CIL_000928_0002 VISTA 14:22714212-23323263
CIL_0008H2 CIL_0008H2_0002 VISTA 14:22740563-23341478
CIL_0008QZ CIL_0008QZ_0002 VISTA 14:22794627-23395917
CIL_0008KV CIL_0008KV_0002 VISTA 14:23186013-23786602
CIL_0008L3 CIL_0008L3_0002 VISTA 14:23193824-23794811
CIL_00087A CIL_00087A_0002 VISTA 14:23220146-23821598
CIL_0004CA CIL_0004CA_0002 CGP 14:23289431-24245920

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000143200 kcnma1a-001 protein_coding Danio_rerio 0 2588
ENSDART00000122557 kcnma1a-201 protein_coding Danio_rerio 0 2111
ENSDART00000082500 kcnma1b-201 protein_coding Danio_rerio 0 569
ENSDART00000113062 BICD1 (1 of 2)-201 protein_coding Danio_rerio 0.00005 55
ENST00000286627 KCNMA1-001 protein_coding Homo_sapiens 0 5343
ENST00000286628 KCNMA1-009 protein_coding Homo_sapiens 0 3216
ENST00000354353 KCNMA1-201 protein_coding Homo_sapiens 0 2593
ENST00000372403 KCNMA1-004 protein_coding Homo_sapiens 0 5005
ENST00000372408 KCNMA1-005 protein_coding Homo_sapiens 0 5073
ENST00000372421 KCNMA1-002 protein_coding Homo_sapiens 0 5369
ENST00000372437 KCNMA1-006 protein_coding Homo_sapiens 0 2911
ENST00000372440 KCNMA1-003 protein_coding Homo_sapiens 0 5587
ENST00000372443 KCNMA1-010 protein_coding Homo_sapiens 0 4446
ENST00000404771 KCNMA1-008 protein_coding Homo_sapiens 0 3336
ENST00000404857 KCNMA1-202 protein_coding Homo_sapiens 0 4602
ENST00000406533 KCNMA1-203 protein_coding Homo_sapiens 0 3661
ENST00000428546 KCNMA1-019 protein_coding Homo_sapiens 0 725
ENST00000434208 KCNMA1-011 protein_coding Homo_sapiens 0 2008
ENST00000450795 KCNMA1-018 protein_coding Homo_sapiens 0 870
ENST00000457953 KCNMA1-007 protein_coding Homo_sapiens 0 3101
ENST00000475352 KCNMA1-012 processed_transcript Homo_sapiens 0 217
ENST00000480683 KCNMA1-015 protein_coding Homo_sapiens 0 749
ENST00000481070 KCNMA1-014 protein_coding Homo_sapiens 0 749
ENST00000484343 KCNMA1-017 processed_transcript Homo_sapiens 0 302
ENST00000484507 KCNMA1-016 processed_transcript Homo_sapiens 0 418
ENST00000604624 KCNMA1-020 protein_coding Homo_sapiens 0 4741
ENST00000618048 KCNMA1-204 protein_coding Homo_sapiens 0 749

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