C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium large conductance calcium-activated channel, subfamily M, alpha member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190985 Kcnma1-004 ENSMUSG00000063142 10090 - 14:23299891-24003977 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLungPlacentaTestisENSMUST00000190985
Transcript ID Adrenal Breast Colon Heart Kidney Lung Placenta Testis
ENSMUST00000190985 11.091±2.68 0.644±0.16 4.441±2.00 0.154±0.01 0.257±0.00 0.466±0.17 0.012±0.00 0.414±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0002 UCNEbase 14:21252402-23394598
CIL_0005E6 CIL_0005E6_0002 CGP 14:22019712-24004859
CIL_000928 CIL_000928_0002 VISTA 14:22714212-23323263
CIL_0008H2 CIL_0008H2_0002 VISTA 14:22740563-23341478
CIL_0008QZ CIL_0008QZ_0002 VISTA 14:22794627-23395917
CIL_0008KV CIL_0008KV_0002 VISTA 14:23186013-23786602
CIL_0008L3 CIL_0008L3_0002 VISTA 14:23193824-23794811
CIL_00087A CIL_00087A_0002 VISTA 14:23220146-23821598
CIL_0004CA CIL_0004CA_0002 CGP 14:23289431-24245920

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000143200 kcnma1a-001 protein_coding Danio_rerio 0 2706
ENSDART00000122557 kcnma1a-201 protein_coding Danio_rerio 0 2082
ENSDART00000082500 kcnma1b-201 protein_coding Danio_rerio 0 569
ENSDART00000035967 brd2a-001 protein_coding Danio_rerio 0.00006 55
ENST00000286627 KCNMA1-001 protein_coding Homo_sapiens 0 4963
ENST00000286628 KCNMA1-009 protein_coding Homo_sapiens 0 2998
ENST00000354353 KCNMA1-201 protein_coding Homo_sapiens 0 2597
ENST00000372403 KCNMA1-004 protein_coding Homo_sapiens 0 5275
ENST00000372408 KCNMA1-005 protein_coding Homo_sapiens 0 5180
ENST00000372421 KCNMA1-002 protein_coding Homo_sapiens 0 4963
ENST00000372437 KCNMA1-006 protein_coding Homo_sapiens 0 2911
ENST00000372440 KCNMA1-003 protein_coding Homo_sapiens 0 4963
ENST00000372443 KCNMA1-010 protein_coding Homo_sapiens 0 4065
ENST00000404771 KCNMA1-008 protein_coding Homo_sapiens 0 2998
ENST00000404857 KCNMA1-202 protein_coding Homo_sapiens 0 4514
ENST00000406533 KCNMA1-203 protein_coding Homo_sapiens 0 3692
ENST00000428546 KCNMA1-019 protein_coding Homo_sapiens 0 725
ENST00000434208 KCNMA1-011 protein_coding Homo_sapiens 0 2008
ENST00000450795 KCNMA1-018 protein_coding Homo_sapiens 0 869
ENST00000457953 KCNMA1-007 protein_coding Homo_sapiens 0 2998
ENST00000475352 KCNMA1-012 processed_transcript Homo_sapiens 0 215
ENST00000480683 KCNMA1-015 protein_coding Homo_sapiens 0 411
ENST00000481070 KCNMA1-014 protein_coding Homo_sapiens 0 411
ENST00000484343 KCNMA1-017 processed_transcript Homo_sapiens 0 302
ENST00000484507 KCNMA1-016 processed_transcript Homo_sapiens 0 418
ENST00000604624 KCNMA1-020 protein_coding Homo_sapiens 0 4455
ENST00000618048 KCNMA1-204 protein_coding Homo_sapiens 0 411

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