C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000002829 SEMA3F-001 ENSG00000001617 9606 + 3:50155129-50189075 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyLungPlacentaENST00000002829
Transcript ID Adipose Kidney Lung Placenta
ENST00000002829 15.048±0.00 21.409±0.00 36.050±0.00 15.724±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FJ CIL_0003FJ_0002 CGP 3:50155045-50196516

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 IEA neural crest cell migration
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005615 TAS extracellular space
GO:0007275 IEA multicellular organismal development
GO:0007411 IDA axon guidance
GO:0016020 IEA membrane
GO:0021612 IEA facial nerve structural organization
GO:0021637 IEA trigeminal nerve structural organization
GO:0021675 ISS nerve development
GO:0021785 IEA branchiomotor neuron axon guidance
GO:0036486 IEA ventral trunk neural crest cell migration
GO:0045499 IDA chemorepellent activity
GO:0048843 IEA negative regulation of axon extension involved in axon guidance
GO:0048846 ISS axon extension involved in axon guidance
GO:0050919 IEA negative chemotaxis
GO:0061549 ISS sympathetic ganglion development
GO:0097490 ISS sympathetic neuron projection extension
GO:0097491 ISS sympathetic neuron projection guidance
GO:1901166 IEA neural crest cell migration involved in autonomic nervous system development
GO:1902285 ISS semaphorin-plexin signaling pathway involved in neuron projection guidance
GO:1902287 IEA semaphorin-plexin signaling pathway involved in axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080560 Sema3f-201 protein_coding Mus_musculus 0 2708

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