C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: xylosyltransferase II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000017003 XYLT2-001 ENSG00000015532 9606 + 17:50346092-50361151 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000017003
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000017003 5.677±0.00 5.790±0.00 4.296±0.00 3.112±2.10 5.093±0.00 1.810±1.38 4.872±0.00 3.009±0.96 4.049±0.00 1.833±0.00 11.921±6.53 11.881±0.61 6.493±3.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006024 NAS:IEA glycosaminoglycan biosynthetic process
GO:0008375 IEA acetylglucosaminyltransferase activity
GO:0015012 IEA heparan sulfate proteoglycan biosynthetic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030158 NAS:IEA protein xylosyltransferase activity
GO:0030166 IEA proteoglycan biosynthetic process
GO:0030206 IEA chondroitin sulfate biosynthetic process
GO:0030210 IEA heparin biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116349 Xylt2-001 protein_coding Mus_musculus 0 3458
ENSMUST00000153485 Xylt2-002 nonsense_mediated_decay Mus_musculus 0 2217
ENSMUST00000032892 Xylt1-001 protein_coding Mus_musculus 0 590
ENSMUST00000146693 Xylt2-004 nonsense_mediated_decay Mus_musculus 0 553
ENSMUST00000154830 Xylt2-003 retained_intron Mus_musculus 0 544
ENSMUST00000150377 Xylt2-005 protein_coding Mus_musculus 0 363
ENSMUST00000160035 Xylt1-002 retained_intron Mus_musculus 0 359
ENSMUST00000174178 Xylt2-006 processed_transcript Mus_musculus 0 228

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