C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin polymerizing factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000035307 CHPF2-001 ENSG00000033100 9606 + 7:151232499-151238827 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000035307
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000035307 6.705±0.00 7.997±0.00 5.556±2.28 3.130±2.04 3.051±1.92 3.497±1.93 2.121±0.68 3.027±1.68 13.141±8.83 21.349±3.17 7.953±2.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0000KE CIL_0000KE_0002 CGP 7:151207837-151238827
CIL_0006DG CIL_0006DG_0002 CGP 7:151232489-151277896

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088295 Chpf2-201 protein_coding Mus_musculus 0 3009
ENSMUST00000121863 Chpf2-001 protein_coding Mus_musculus 0 3000
ENSMUST00000144995 Smarcd3-002 retained_intron Mus_musculus 0 1559
ENSMUST00000138683 Chpf-003 nonsense_mediated_decay Mus_musculus 0.0000000000003 82
ENSMUST00000143496 Chpf-004 retained_intron Mus_musculus 0.0000000000003 82
ENSMUST00000094818 Chpf-002 protein_coding Mus_musculus 0.0000000000003 82
ENSMUST00000079205 Chpf-001 protein_coding Mus_musculus 0.0000000000003 82

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