C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulocalbin 1, EF-hand calcium binding domain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000054950 RCN1-002 ENSG00000049449 9606 + 11:32090904-32105755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000054950
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000054950 10.534±0.00 1.064±0.00 1.870±0.01 5.646±1.79 5.630±1.87 2.592±0.84 6.032±2.47 3.690±0.00 4.582±0.92 3.287±1.73 18.629±10.64 51.938±10.33 6.538±2.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KI CIL_0008KI_0001 VISTA 11:31301275-31902571
CIL_0007UQ CIL_0007UQ_0001 VISTA 11:31363809-31965336
CIL_0008UP CIL_0008UP_0001 VISTA 11:31463875-32065678
CIL_0007XG CIL_0007XG_0001 VISTA 11:31494904-32096873
CIL_000914 CIL_000914_0001 VISTA 11:31574048-32177516
CIL_0007JA CIL_0007JA_0002 UCNEbase 11:31639896-31819124
CIL_0007PY CIL_0007PY_0001 VISTA 11:31667627-32268476
CIL_00096J CIL_00096J_0001 VISTA 11:31730852-32331950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0043010 IEA camera-type eye development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006128 Rcn1-001 protein_coding Mus_musculus 0 1240
ENSMUST00000127019 Rcn1-002 retained_intron Mus_musculus 0 955

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