C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000080059 HDAC7-001 ENSG00000061273 9606 - 12:47782722-47819785 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonLiverLungOvaryPlacentaENST00000080059
Transcript ID Adipose Adrenal Colon Liver Lung Ovary Placenta
ENST00000080059 17.963±0.00 15.860±0.00 12.045±0.00 3.648±0.00 13.239±11.37 23.796±6.05 19.019±4.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OC CIL_0002OC_0001 CGP 12:47734672-47782753
CIL_0003DF CIL_0003DF_0002 CGP 12:47753916-47833132
CIL_0003DI CIL_0003DI_0002 CGP 12:47782722-47943048

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001570 IEA vasculogenesis
GO:0003682 IEA chromatin binding
GO:0003714 IEA transcription corepressor activity
GO:0004407 IEA histone deacetylase activity
GO:0005080 IPI protein kinase C binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007043 IEA cell-cell junction assembly
GO:0007219 TAS Notch signaling pathway
GO:0016568 IEA chromatin modification
GO:0019901 IPI protein kinase binding
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0032703 IDA negative regulation of interleukin-2 production
GO:0033613 IPI activating transcription factor binding
GO:0045668 IMP negative regulation of osteoblast differentiation
GO:0046872 IEA metal ion binding
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0070491 IPI repressing transcription factor binding
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0071889 IDA 14-3-3 protein binding
GO:0090050 IMP positive regulation of cell migration involved in sprouting angiogenesis
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118294 Hdac7-007 protein_coding Mus_musculus 0 3184
ENSMUST00000116409 Hdac7-002 protein_coding Mus_musculus 0 3090
ENSMUST00000079838 Hdac7-006 protein_coding Mus_musculus 0 2734
ENSMUST00000119670 Hdac7-003 protein_coding Mus_musculus 0 2206
ENSMUST00000088402 Hdac7-005 protein_coding Mus_musculus 0 2206
ENSMUST00000116408 Hdac7-001 protein_coding Mus_musculus 0 2206
ENSMUST00000121514 Hdac7-008 protein_coding Mus_musculus 0 1742
ENSMUST00000120683 Hdac7-004 protein_coding Mus_musculus 0 1077
ENSMUST00000156045 Hdac7-009 nonsense_mediated_decay Mus_musculus 0 944
ENSMUST00000134258 Hdac7-011 protein_coding Mus_musculus 0 608
ENSMUST00000107152 Hdac5-001 protein_coding Mus_musculus 0 532
ENSMUST00000107150 Hdac5-019 protein_coding Mus_musculus 0 532
ENSMUST00000124077 Hdac5-007 nonsense_mediated_decay Mus_musculus 0 532
ENSMUST00000008999 Hdac5-002 protein_coding Mus_musculus 0 532
ENSMUST00000135651 Hdac7-012 protein_coding Mus_musculus 0 496
ENSMUST00000149087 Hdac5-020 retained_intron Mus_musculus 0 368
ENSMUST00000133651 Hdac5-010 retained_intron Mus_musculus 1e-37 163

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