C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: capicua transcriptional repressor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000160740 CIC-005 ENSG00000079432 9606 + 19:42284020-42295796 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLungMuscleOvaryENST00000160740
Transcript ID Brain Colon Heart Kidney Lung Muscle Ovary
ENST00000160740 3.048±0.00 2.923±0.00 3.037±0.00 1.250±0.00 2.178±1.39 2.844±0.00 10.771±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000287 CIL_000287_0001 CGP 19:42247572-42295797
CIL_0005V7 CIL_0005V7_0001 CGP 19:42268537-42303546

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163320 Cic-002 protein_coding Mus_musculus 0 6938
ENSMUST00000005578 Cic-201 protein_coding Mus_musculus 0 6905
ENSMUST00000169266 Cic-001 protein_coding Mus_musculus 0 5984
ENSMUST00000167379 Cic-004 retained_intron Mus_musculus 0 5064
ENSMUST00000165239 Cic-015 protein_coding Mus_musculus 0 4176
ENSMUST00000168956 Cic-008 nonsense_mediated_decay Mus_musculus 0 704
ENSMUST00000163901 Cic-013 protein_coding Mus_musculus 0 455
ENSMUST00000163819 Cic-010 processed_transcript Mus_musculus 0 357
ENSMUST00000167162 Cic-011 retained_intron Mus_musculus 0 333
ENSMUST00000164820 Cic-014 protein_coding Mus_musculus 0 263
ENSMUST00000165742 Cic-005 retained_intron Mus_musculus 0 261
ENSMUST00000169743 Cic-009 processed_transcript Mus_musculus 5.00264e-43 182
ENSMUST00000164440 Cic-007 protein_coding Mus_musculus 6e-27 128

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